CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.307 rna-evm.model.Chr19.307 Chr19 12034107 12046415 PREDICTED: Fucolectin-1 nan K24469
gene-evm.TU.Chr19.308 rna-evm.model.Chr19.308 Chr19 12049588 12052626 uncharacterized protein nan nan
gene-evm.TU.Chr19.309 rna-evm.model.Chr19.309 Chr19 12078395 12082176 PREDICTED: Melanocortin receptor 5 GO:0004930;GO:0007186;GO:0016020 K04203
gene-evm.TU.Chr19.310 rna-evm.model.Chr19.310 Chr19 12090511 12106249 PREDICTED: Bifunctional coenzyme A synthase GO:0003824;GO:0004140;GO:0005524;GO:0009058;GO:0015937 K02318
gene-evm.TU.Chr19.311_evm.TU.Chr19.312 rna-evm.model.Chr19.311_evm.model.Chr19.312 Chr19 12113417 12130716 PREDICTED: Cathepsin L1 GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr19.313 rna-evm.model.Chr19.313 Chr19 12135784 12149224 PREDICTED: Cathepsin L1 GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr19.315 rna-evm.model.Chr19.315 Chr19 12172481 12172780 PREDICTED: deleted in malignant brain tumors 1 protein nan nan
gene-evm.TU.Chr19.316 rna-evm.model.Chr19.316 Chr19 12179688 12183348 PREDICTED: Cathepsin L GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr19.317 rna-evm.model.Chr19.317 Chr19 12185316 12198865 PREDICTED: Digestive cysteine proteinase 2 GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr19.318 rna-evm.model.Chr19.318 Chr19 12201577 12222996 PREDICTED: Cathepsin L1 GO:0006508;GO:0008234 K01365

For more detailed data, you can explore the Download section to access the full dataset.