CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.35 rna-evm.model.Chr19.35 Chr19 2197203 2198345 uncharacterized protein GO:0046872 nan
gene-evm.TU.Chr19.350 rna-evm.model.Chr19.350 Chr19 12920268 12930019 PREDICTED: Proteasome subunit beta type-4 GO:0004298;GO:0005839;GO:0051603 K02736
gene-evm.TU.Chr19.351 rna-evm.model.Chr19.351 Chr19 12939402 12951798 PREDICTED: Phosphoenolpyruvate carboxykinase [GTP] GO:0004611;GO:0005525;GO:0006094 K01596
gene-evm.TU.Chr19.352 rna-evm.model.Chr19.352 Chr19 12958291 12965211 PREDICTED: 40S ribosomal protein S27 GO:0003735;GO:0005840;GO:0006412 K02978
gene-evm.TU.Chr19.353 rna-evm.model.Chr19.353 Chr19 12970692 12983333 PREDICTED: Ras-related protein RabJ GO:0003924;GO:0005525 K07890
gene-evm.TU.Chr19.354 rna-evm.model.Chr19.354 Chr19 12984919 12987052 PREDICTED: Histidine triad nucleotide-binding protein 1 GO:0003824 K02503
gene-evm.TU.Chr19.356 rna-evm.model.Chr19.356 Chr19 13004229 13070261 PREDICTED: Carnitine O-palmitoyltransferase 1, liver isoform GO:0016746 K08765
gene-evm.TU.Chr19.357 rna-evm.model.Chr19.357 Chr19 13075900 13080244 PREDICTED: Zinc finger protein 846 GO:0003676 K09228
gene-evm.TU.Chr19.36 rna-evm.model.Chr19.36 Chr19 2199701 2200081 PREDICTED: serine/arginine repetitive matrix protein 2 nan nan
gene-evm.TU.Chr19.364 rna-evm.model.Chr19.364 Chr19 13196466 13201660 uncharacterized protein nan K24464

For more detailed data, you can explore the Download section to access the full dataset.