CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.246 rna-evm.model.Chr19.246 Chr19 10582919 10591600 PREDICTED: Thioredoxin domain-containing protein GO:0045454 K09584
gene-evm.TU.Chr19.247 rna-evm.model.Chr19.247 Chr19 10599351 10611201 PREDICTED: Angiopoietin-related protein 2 GO:0005509 K10104
gene-evm.TU.Chr19.248 rna-evm.model.Chr19.248 Chr19 10615784 10631538 PREDICTED: Methyltransferase-like protein 24 nan K16381
gene-evm.TU.Chr19.249 rna-evm.model.Chr19.249 Chr19 10636167 10651564 PREDICTED: Calpain-5 GO:0004198;GO:0006508 K08574
gene-evm.TU.Chr19.250 rna-evm.model.Chr19.250 Chr19 10662751 10676091 PREDICTED: Calpain-5 GO:0004198;GO:0006508 K08574
gene-evm.TU.Chr19.252 rna-evm.model.Chr19.252.1 Chr19 10682332 10710755 PREDICTED: Calpain-5 GO:0004198;GO:0006508 K08574
gene-evm.TU.Chr19.253_evm.TU.Chr19.257 rna-evm.model.Chr19.253_evm.model.Chr19.257 Chr19 10736772 10800390 PREDICTED: Polysialoglycoprotein GO:0005576;GO:0030414 K23637
gene-evm.TU.Chr19.256 rna-evm.model.Chr19.256 Chr19 10783065 10783784 PREDICTED: Replicase polyprotein 1ab nan K24295
gene-evm.TU.Chr19.257 rna-evm.model.Chr19.257.1 Chr19 10783786 10797386 PREDICTED: Polysialoglycoprotein nan K01316
gene-evm.TU.Chr19.258 rna-evm.model.Chr19.258 Chr19 10825714 10826946 PREDICTED: protein kinase D [EC:2.7.11.13] nan K12575

For more detailed data, you can explore the Download section to access the full dataset.