CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.337 rna-evm.model.Chr19.337 Chr19 12609781 12610794 PREDICTED: Atypical chemokine receptor 4 GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr19.34 rna-evm.model.Chr19.34 Chr19 2194716 2196790 PREDICTED: myotubularin-related protein 10/11/12 nan K21037
gene-evm.TU.Chr19.340 rna-evm.model.Chr19.340 Chr19 12642451 12643461 PREDICTED: CD109 antigen nan K19263
gene-evm.TU.Chr19.342 rna-evm.model.Chr19.342 Chr19 12667646 12690883 PREDICTED: LHFPL tetraspan subfamily member 2a protein nan K23893
gene-evm.TU.Chr19.343 rna-evm.model.Chr19.343 Chr19 12704828 12759890 PREDICTED: Iporin nan K23291
gene-evm.TU.Chr19.344 rna-evm.model.Chr19.344 Chr19 12771506 12798849 PREDICTED: Cysteine dioxygenase type 1 GO:0005506;GO:0016702;GO:0055114 K00456
gene-evm.TU.Chr19.345 rna-evm.model.Chr19.345 Chr19 12820184 12823906 PREDICTED: Toll-like receptor 4 GO:0005515;GO:0007165 K10160
gene-evm.TU.Chr19.346 rna-evm.model.Chr19.346 Chr19 12834063 12857432 uncharacterized protein nan K00437
gene-evm.TU.Chr19.347 rna-evm.model.Chr19.347 Chr19 12859462 12863727 uncharacterized protein nan K00946
gene-evm.TU.Chr19.349 rna-evm.model.Chr19.349 Chr19 12900184 12915299 PREDICTED: Probable nuclear hormone receptor HR3 GO:0003677;GO:0003700;GO:0003707;GO:0004879;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K14033

For more detailed data, you can explore the Download section to access the full dataset.