CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.259 rna-evm.model.Chr19.259 Chr19 10843225 10862291 PREDICTED: NAD(P)H-hydrate epimerase nan K17759
gene-evm.TU.Chr19.260 rna-evm.model.Chr19.260 Chr19 10894856 10900625 uncharacterized protein nan K19369
gene-evm.TU.Chr19.261 rna-evm.model.Chr19.261 Chr19 10916185 10917093 PREDICTED: tigger transposable element-derived protein 4-like, partial nan nan
gene-evm.TU.Chr19.262 rna-evm.model.Chr19.262 Chr19 10917732 10919335 PREDICTED: Tigger transposable element-derived protein 5 nan K11496
gene-evm.TU.Chr19.263 rna-evm.model.Chr19.263 Chr19 11039175 11039498 uncharacterized protein nan K06790
gene-evm.TU.Chr19.264 rna-evm.model.Chr19.264 Chr19 11055855 11056319 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K07494
gene-evm.TU.Chr19.266 rna-evm.model.Chr19.266 Chr19 11094235 11101662 PREDICTED: SPRY domain-containing protein 3 GO:0005515 K12026
gene-evm.TU.Chr19.267 rna-evm.model.Chr19.267 Chr19 11109251 11123670 uncharacterized protein nan nan
gene-evm.TU.Chr19.268 rna-evm.model.Chr19.268 Chr19 11124314 11169602 PREDICTED: Collectin-12 nan K06563
gene-evm.TU.Chr19.269 rna-evm.model.Chr19.269 Chr19 11189499 11220749 PREDICTED: Fibropellin-1 GO:0005509 K06839

For more detailed data, you can explore the Download section to access the full dataset.