CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.284 rna-evm.model.Chr19.284 Chr19 11531956 11547584 PREDICTED: Neuronal acetylcholine receptor subunit alpha-10 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr19.287 rna-evm.model.Chr19.287 Chr19 11645707 11646938 PREDICTED: Apolipoprotein L6 GO:0005576;GO:0006869;GO:0008289;GO:0042157 K14480
gene-evm.TU.Chr19.288 rna-evm.model.Chr19.288 Chr19 11654147 11669119 PREDICTED: Apolipoprotein L3 GO:0005576;GO:0006869;GO:0008289;GO:0042157 K14480
gene-evm.TU.Chr19.289 rna-evm.model.Chr19.289 Chr19 11674675 11676342 PREDICTED: Protein PIF GO:0005576;GO:0006030;GO:0008061 nan
gene-evm.TU.Chr19.29 rna-evm.model.Chr19.29 Chr19 1912043 1917332 PREDICTED: exocyst complex component 1 nan nan
gene-evm.TU.Chr19.290 rna-evm.model.Chr19.290 Chr19 11682484 11695277 uncharacterized protein nan nan
gene-evm.TU.Chr19.291 rna-evm.model.Chr19.291 Chr19 11703156 11708451 PREDICTED: Deoxyuridine 5'-triphosphate nucleotidohydrolase GO:0004170;GO:0046080 K01520
gene-evm.TU.Chr19.292 rna-evm.model.Chr19.292 Chr19 11713296 11721038 PREDICTED: Protein KTI12 homolog nan K15456
gene-evm.TU.Chr19.293 rna-evm.model.Chr19.293 Chr19 11728509 11731901 PREDICTED: protein hinderin nan nan
gene-evm.TU.Chr19.294 rna-evm.model.Chr19.294 Chr19 11736911 11746058 PREDICTED: Protein hinderin nan K16781

For more detailed data, you can explore the Download section to access the full dataset.