CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.215 rna-evm.model.Chr19.215 Chr19 9604266 9606272 PREDICTED: mucin-2 nan K23820
gene-evm.TU.Chr19.216 rna-evm.model.Chr19.216 Chr19 9606527 9608577 PREDICTED: mucin-2 nan K22023
gene-evm.TU.Chr19.217 rna-evm.model.Chr19.217 Chr19 9660825 9664133 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K00986
gene-evm.TU.Chr19.218 rna-evm.model.Chr19.218 Chr19 9679506 9681758 PREDICTED: Probable cytoplasmic aconitate hydratase GO:0003994;GO:0006879;GO:0010040;GO:0051539 K01681
gene-evm.TU.Chr19.22 rna-evm.model.Chr19.22 Chr19 1120342 1122415 PREDICTED: tensin nan nan
gene-evm.TU.Chr19.220 rna-evm.model.Chr19.220 Chr19 9780013 9790157 PREDICTED: Ficolin-1 nan K10104
gene-evm.TU.Chr19.224 rna-evm.model.Chr19.224 Chr19 9996578 10004442 PREDICTED: Probable cytoplasmic aconitate hydratase GO:0003994;GO:0006879;GO:0010040;GO:0051539 K01681
gene-evm.TU.Chr19.226 rna-evm.model.Chr19.226 Chr19 10040178 10041025 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr19.227 rna-evm.model.Chr19.227 Chr19 10043537 10043893 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr19.229 rna-evm.model.Chr19.229 Chr19 10104926 10107985 PREDICTED: adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] nan nan

For more detailed data, you can explore the Download section to access the full dataset.