CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.204 rna-evm.model.Chr19.204 Chr19 8997340 9002570 PREDICTED: Ficolin-1 nan K10104
gene-evm.TU.Chr19.205 rna-evm.model.Chr19.205 Chr19 9009304 9053878 PREDICTED: Serine/threonine-protein kinase Nek9 GO:0004672;GO:0005524;GO:0006468 K20878
gene-evm.TU.Chr19.206 rna-evm.model.Chr19.206 Chr19 9102838 9107351 PREDICTED: NAD(P)H-hydrate epimerase nan K17759
gene-evm.TU.Chr19.207 rna-evm.model.Chr19.207 Chr19 9113416 9122704 PREDICTED: NAD(P)H-hydrate epimerase nan K17759
gene-evm.TU.Chr19.209 rna-evm.model.Chr19.209 Chr19 9386919 9435166 PREDICTED: Protogenin GO:0005515 K22657
gene-evm.TU.Chr19.210 rna-evm.model.Chr19.210 Chr19 9495503 9495916 PREDICTED: Multimerin-2 nan K24236
gene-evm.TU.Chr19.211 rna-evm.model.Chr19.211 Chr19 9498948 9499400 PREDICTED: Caprin-2 nan K23284
gene-evm.TU.Chr19.212 rna-evm.model.Chr19.212 Chr19 9502871 9508821 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 GO:0008270 K24236
gene-evm.TU.Chr19.213 rna-evm.model.Chr19.213 Chr19 9519431 9526644 PREDICTED: Uromodulin nan K19899
gene-evm.TU.Chr19.214 rna-evm.model.Chr19.214 Chr19 9542704 9601821 PREDICTED: mucin-2 nan K03900

For more detailed data, you can explore the Download section to access the full dataset.