CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.195 rna-evm.model.Chr19.195 Chr19 8706630 8721443 PREDICTED: Macrophage scavenger receptor types I and II GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr19.196 rna-evm.model.Chr19.196 Chr19 8729105 8772192 PREDICTED: Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha GO:0016307;GO:0046488 K00889
gene-evm.TU.Chr19.197 rna-evm.model.Chr19.197 Chr19 8786076 8786932 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 nan K11714
gene-evm.TU.Chr19.198 rna-evm.model.Chr19.198 Chr19 8796767 8797591 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 nan K11714
gene-evm.TU.Chr19.2 rna-evm.model.Chr19.2 Chr19 24398 36720 uncharacterized protein nan K11244
gene-evm.TU.Chr19.20 rna-evm.model.Chr19.20 Chr19 1077026 1090661 uncharacterized protein nan K13933
gene-evm.TU.Chr19.200 rna-evm.model.Chr19.200 Chr19 8803162 8814995 PREDICTED: Digestive cysteine proteinase 2 GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr19.201 rna-evm.model.Chr19.201 Chr19 8824096 8827486 uncharacterized protein nan nan
gene-evm.TU.Chr19.202 rna-evm.model.Chr19.202 Chr19 8850479 8851625 uncharacterized protein GO:0005509 K13448
gene-evm.TU.Chr19.203 rna-evm.model.Chr19.203 Chr19 8932164 8985488 PREDICTED: Fibrinogen-like protein A nan K10104

For more detailed data, you can explore the Download section to access the full dataset.