CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.183 rna-evm.model.Chr19.183 Chr19 8288172 8289320 PREDICTED: Ficolin-3 nan K10104
gene-evm.TU.Chr19.185 rna-evm.model.Chr19.185 Chr19 8335828 8342559 PREDICTED: Cathepsin L GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr19.186 rna-evm.model.Chr19.186 Chr19 8382502 8389802 PREDICTED: Ficolin-1 nan K25409
gene-evm.TU.Chr19.187 rna-evm.model.Chr19.187 Chr19 8450232 8454357 PREDICTED: Cathepsin L1 (Fragments) GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr19.189 rna-evm.model.Chr19.189 Chr19 8565557 8582020 uncharacterized protein nan K13806
gene-evm.TU.Chr19.190 rna-evm.model.Chr19.190 Chr19 8587405 8590750 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr19.191 rna-evm.model.Chr19.191 Chr19 8605234 8606139 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr19.192 rna-evm.model.Chr19.192 Chr19 8610298 8611269 PREDICTED: Mu-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr19.193 rna-evm.model.Chr19.193 Chr19 8626635 8649092 PREDICTED: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 nan K22544
gene-evm.TU.Chr19.194 rna-evm.model.Chr19.194 Chr19 8663210 8703031 PREDICTED: Neurogenic locus Notch protein GO:0005509 K02599

For more detailed data, you can explore the Download section to access the full dataset.