CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.162 rna-evm.model.Chr19.162 Chr19 7792151 7821328 PREDICTED: E3 ubiquitin-protein ligase RNF181 nan K11982
gene-evm.TU.Chr19.163 rna-evm.model.Chr19.163.1 Chr19 7831567 7860218 PREDICTED: Tropomodulin GO:0005523;GO:0051694 K10370
gene-evm.TU.Chr19.164 rna-evm.model.Chr19.164 Chr19 7873752 7895016 PREDICTED: Cytoplasmic polyadenylation element-binding protein GO:0003676;GO:0003730;GO:0006417;GO:0045182 K02602
gene-evm.TU.Chr19.167 rna-evm.model.Chr19.167 Chr19 7939222 7943741 uncharacterized protein GO:0004867 K24518
gene-evm.TU.Chr19.168 rna-evm.model.Chr19.168 Chr19 7945637 7954320 PREDICTED: Antistasin GO:0004867 K24518
gene-evm.TU.Chr19.170 rna-evm.model.Chr19.170 Chr19 7993917 8008876 PREDICTED: Tenascin-X nan K08654
gene-evm.TU.Chr19.173 rna-evm.model.Chr19.173 Chr19 8059723 8071790 PREDICTED: LANO_0E05842g1_1 nan K23352
gene-evm.TU.Chr19.176 rna-evm.model.Chr19.176 Chr19 8126951 8138806 PREDICTED: Ficolin-1 nan K10104
gene-evm.TU.Chr19.177 rna-evm.model.Chr19.177 Chr19 8145666 8189339 PREDICTED: Cathepsin L GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr19.18 rna-evm.model.Chr19.18 Chr19 995817 1062060 PREDICTED: Hemicentin-1 nan K25409

For more detailed data, you can explore the Download section to access the full dataset.