CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.146 rna-evm.model.Chr19.146 Chr19 7389027 7476078 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K20053
gene-evm.TU.Chr19.147 rna-evm.model.Chr19.147 Chr19 7489241 7581646 PREDICTED: Dynein heavy chain 6, axonemal GO:0003777;GO:0005524;GO:0007018;GO:0030286 K10408
gene-evm.TU.Chr19.150 rna-evm.model.Chr19.150 Chr19 7601452 7620709 PREDICTED: jumonji domain-containing protein 2 [EC:1.14.11.-] nan K13864
gene-evm.TU.Chr19.151 rna-evm.model.Chr19.151 Chr19 7621719 7624007 uncharacterized protein nan nan
gene-evm.TU.Chr19.153 rna-evm.model.Chr19.153 Chr19 7642206 7643300 PREDICTED: NIMA (never in mitosis gene a)-related kinase 11 [EC:2.7.11.1] nan K09168
gene-evm.TU.Chr19.155 rna-evm.model.Chr19.155 Chr19 7658728 7659669 PREDICTED: U3 small nucleolar RNA-associated protein 19 nan K05220
gene-evm.TU.Chr19.156 rna-evm.model.Chr19.156 Chr19 7661094 7670358 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K07485
gene-evm.TU.Chr19.157 rna-evm.model.Chr19.157 Chr19 7670862 7672848 PREDICTED: Zinc finger protein 512B nan K20681
gene-evm.TU.Chr19.158 rna-evm.model.Chr19.158 Chr19 7673472 7674524 PREDICTED: Semaphorin-5B nan K06841
gene-evm.TU.Chr19.161 rna-evm.model.Chr19.161 Chr19 7746222 7751710 uncharacterized protein GO:0004867 K12887

For more detailed data, you can explore the Download section to access the full dataset.