CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1283 rna-evm.model.Chr19.1283 Chr19 45068856 45070109 PREDICTED: echinoderm microtubule-associated protein-like 6 nan K26778
gene-evm.TU.Chr19.1284 rna-evm.model.Chr19.1284 Chr19 45071117 45071722 uncharacterized protein nan K10804
gene-evm.TU.Chr19.1289 rna-evm.model.Chr19.1289 Chr19 45298364 45305463 uncharacterized protein nan K18388
gene-evm.TU.Chr19.129 rna-evm.model.Chr19.129 Chr19 6765881 6795785 PREDICTED: Protein sidekick-1 nan K17341
gene-evm.TU.Chr19.1292 rna-evm.model.Chr19.1292 Chr19 45336149 45337522 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase nan K11714
gene-evm.TU.Chr19.1293 rna-evm.model.Chr19.1293 Chr19 45399974 45410156 uncharacterized protein nan nan
gene-evm.TU.Chr19.13 rna-evm.model.Chr19.13 Chr19 731516 732499 uncharacterized protein nan K04736
gene-evm.TU.Chr19.130 rna-evm.model.Chr19.130 Chr19 6804447 6828434 PREDICTED: Peroxidasin homolog nan K06756
gene-evm.TU.Chr19.132 rna-evm.model.Chr19.132 Chr19 6854830 6865963 PREDICTED: Zinc finger protein 69 GO:0003676 K09214
gene-evm.TU.Chr19.133 rna-evm.model.Chr19.133 Chr19 6870818 6884730 PREDICTED: Guanine nucleotide-binding protein G(q) subunit alpha GO:0003924;GO:0007186;GO:0019001;GO:0031683 K04636

For more detailed data, you can explore the Download section to access the full dataset.