CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1269 rna-evm.model.Chr19.1269 Chr19 44833338 44833853 uncharacterized protein nan K08629
gene-evm.TU.Chr19.127 rna-evm.model.Chr19.127 Chr19 6740902 6756996 PREDICTED: Hemicentin-2 nan K06491
gene-evm.TU.Chr19.1273 rna-evm.model.Chr19.1273 Chr19 44892404 44899017 PREDICTED: Sal-like protein 3 GO:0003676 K19871
gene-evm.TU.Chr19.1274 rna-evm.model.Chr19.1274 Chr19 44941747 44942268 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan nan
gene-evm.TU.Chr19.1275 rna-evm.model.Chr19.1275 Chr19 44942315 44942794 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr19.1276 rna-evm.model.Chr19.1276 Chr19 44944382 44945194 uncharacterized protein nan K10284
gene-evm.TU.Chr19.1277 rna-evm.model.Chr19.1277 Chr19 44945307 44947954 uncharacterized protein nan K08838
gene-evm.TU.Chr19.1278 rna-evm.model.Chr19.1278 Chr19 44949268 44954923 PREDICTED: Protein FAM76B nan K11505
gene-evm.TU.Chr19.128 rna-evm.model.Chr19.128 Chr19 6759643 6765109 PREDICTED: nascent polypeptide-associated complex subunit alpha nan K03489
gene-evm.TU.Chr19.1282 rna-evm.model.Chr19.1282 Chr19 45066361 45067973 PREDICTED: protocadherin Fat 4 nan K04763

For more detailed data, you can explore the Download section to access the full dataset.