CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1254 rna-evm.model.Chr19.1254 Chr19 43955121 43966314 uncharacterized protein nan K08334
gene-evm.TU.Chr19.1256 rna-evm.model.Chr19.1256 Chr19 44113840 44120904 PREDICTED: Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial nan K01969
gene-evm.TU.Chr19.1257 rna-evm.model.Chr19.1257 Chr19 44230499 44232154 PREDICTED: protein kinase D [EC:2.7.11.13] nan K24220
gene-evm.TU.Chr19.1258 rna-evm.model.Chr19.1258 Chr19 44232352 44232888 uncharacterized protein nan nan
gene-evm.TU.Chr19.1259 rna-evm.model.Chr19.1259 Chr19 44356931 44371989 PREDICTED: M-phase phosphoprotein 8 nan K23677
gene-evm.TU.Chr19.126 rna-evm.model.Chr19.126 Chr19 6728107 6736235 PREDICTED: Gamma-aminobutyric acid receptor subunit beta-1 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05192
gene-evm.TU.Chr19.1261 rna-evm.model.Chr19.1261 Chr19 44482816 44483046 uncharacterized protein nan nan
gene-evm.TU.Chr19.1262 rna-evm.model.Chr19.1262 Chr19 44483268 44487968 uncharacterized protein nan nan
gene-evm.TU.Chr19.1266 rna-evm.model.Chr19.1266 Chr19 44782696 44784868 uncharacterized protein nan K07327
gene-evm.TU.Chr19.1268 rna-evm.model.Chr19.1268 Chr19 44826149 44832649 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan nan

For more detailed data, you can explore the Download section to access the full dataset.