CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1238 rna-evm.model.Chr19.1238 Chr19 43102655 43105857 PREDICTED: DNA polymerase III PolC-type nan K02342
gene-evm.TU.Chr19.1239 rna-evm.model.Chr19.1239 Chr19 43495668 43497728 uncharacterized protein nan nan
gene-evm.TU.Chr19.124 rna-evm.model.Chr19.124 Chr19 6643587 6652207 uncharacterized protein nan K07765
gene-evm.TU.Chr19.1241 rna-evm.model.Chr19.1241 Chr19 43508784 43509510 uncharacterized protein nan K10080
gene-evm.TU.Chr19.1242 rna-evm.model.Chr19.1242 Chr19 43509641 43509909 uncharacterized protein nan nan
gene-evm.TU.Chr19.125 rna-evm.model.Chr19.125 Chr19 6697282 6716240 PREDICTED: EF-hand domain-containing protein D1 nan nan
gene-evm.TU.Chr19.1250 rna-evm.model.Chr19.1250 Chr19 43935088 43935867 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr19.1251 rna-evm.model.Chr19.1251 Chr19 43935938 43936612 PREDICTED: alpha-2-macroglobulin nan nan
gene-evm.TU.Chr19.1252 rna-evm.model.Chr19.1252 Chr19 43941406 43949362 PREDICTED: Signaling mucin HKR1 nan K10060
gene-evm.TU.Chr19.1253 rna-evm.model.Chr19.1253 Chr19 43949591 43955019 PREDICTED: Putative nuclease HARBI1 nan K23222

For more detailed data, you can explore the Download section to access the full dataset.