CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1205 rna-evm.model.Chr19.1205 Chr19 41033851 41047352 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K10421
gene-evm.TU.Chr19.1206 rna-evm.model.Chr19.1206 Chr19 41052870 41062216 uncharacterized protein nan K26964
gene-evm.TU.Chr19.1207 rna-evm.model.Chr19.1207 Chr19 41077378 41080232 uncharacterized protein nan K26964
gene-evm.TU.Chr19.1209 rna-evm.model.Chr19.1209 Chr19 41259254 41262090 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] GO:0007276 K10404
gene-evm.TU.Chr19.121 rna-evm.model.Chr19.121 Chr19 6580258 6599327 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K03900
gene-evm.TU.Chr19.1210 rna-evm.model.Chr19.1210 Chr19 41275029 41276183 uncharacterized protein nan K25334
gene-evm.TU.Chr19.1211 rna-evm.model.Chr19.1211 Chr19 41276704 41277786 PREDICTED: Enzymatic polyprotein nan K03469
gene-evm.TU.Chr19.1212 rna-evm.model.Chr19.1212 Chr19 41277849 41278178 PREDICTED: pre-mRNA-splicing factor SYF1 nan nan
gene-evm.TU.Chr19.1213 rna-evm.model.Chr19.1213 Chr19 41279484 41280149 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr19.122 rna-evm.model.Chr19.122 Chr19 6610803 6612664 uncharacterized protein nan K07362

For more detailed data, you can explore the Download section to access the full dataset.