CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1192 rna-evm.model.Chr19.1192 Chr19 40028273 40040207 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs adt-1 nan K03995
gene-evm.TU.Chr19.1193 rna-evm.model.Chr19.1193 Chr19 40126816 40158248 PREDICTED: Netrin receptor DCC GO:0005515;GO:0005886;GO:0007399;GO:0007411;GO:0030513;GO:0038023;GO:0055072 K22657
gene-evm.TU.Chr19.1195 rna-evm.model.Chr19.1195 Chr19 40379505 40383620 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K10882
gene-evm.TU.Chr19.1196 rna-evm.model.Chr19.1196 Chr19 40480984 40484441 PREDICTED: Zinc finger protein 862 GO:0046983 K24644
gene-evm.TU.Chr19.1197 rna-evm.model.Chr19.1197 Chr19 40495331 40511284 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr19.1198 rna-evm.model.Chr19.1198 Chr19 40519061 40543706 PREDICTED: Probable RNA-directed DNA polymerase from transposon X-element nan K26653
gene-evm.TU.Chr19.120 rna-evm.model.Chr19.120 Chr19 6574472 6578933 uncharacterized protein nan nan
gene-evm.TU.Chr19.1202 rna-evm.model.Chr19.1202 Chr19 40680304 40692310 uncharacterized protein nan nan
gene-evm.TU.Chr19.1203 rna-evm.model.Chr19.1203 Chr19 40721104 40721454 uncharacterized protein nan K18547
gene-evm.TU.Chr19.1204 rna-evm.model.Chr19.1204 Chr19 40850028 40854107 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K20361

For more detailed data, you can explore the Download section to access the full dataset.