CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.118 rna-evm.model.Chr19.118 Chr19 6525823 6558925 PREDICTED: Disintegrin and metalloproteinase domain-containing protein 10 GO:0004222;GO:0006508 K06704
gene-evm.TU.Chr19.1180 rna-evm.model.Chr19.1180 Chr19 39155786 39175181 PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B nan K18545
gene-evm.TU.Chr19.1182 rna-evm.model.Chr19.1182 Chr19 39561802 39563367 PREDICTED: Temptin nan nan
gene-evm.TU.Chr19.1183 rna-evm.model.Chr19.1183 Chr19 39582010 39604577 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K04011
gene-evm.TU.Chr19.1184 rna-evm.model.Chr19.1184 Chr19 39607891 39610899 PREDICTED: Sialidase GO:0005515 nan
gene-evm.TU.Chr19.1185 rna-evm.model.Chr19.1185 Chr19 39622188 39643495 PREDICTED: Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial GO:0005515;GO:0016874 K01969
gene-evm.TU.Chr19.1188 rna-evm.model.Chr19.1188 Chr19 39654570 39675067 uncharacterized protein nan K24400
gene-evm.TU.Chr19.1189 rna-evm.model.Chr19.1189 Chr19 39684962 39706152 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K04011
gene-evm.TU.Chr19.119 rna-evm.model.Chr19.119 Chr19 6558929 6571923 PREDICTED: Disintegrin and metalloproteinase domain-containing protein 10 GO:0004222;GO:0006509;GO:0007219 K06704
gene-evm.TU.Chr19.1191 rna-evm.model.Chr19.1191 Chr19 39727645 39771512 PREDICTED: Neogenin (Fragment) GO:0005515;GO:0005886;GO:0007399;GO:0007411;GO:0030513;GO:0038023;GO:0055072 K05695

For more detailed data, you can explore the Download section to access the full dataset.