CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.116 rna-evm.model.Chr19.116 Chr19 6477530 6479882 PREDICTED: palladin nan K10764
gene-evm.TU.Chr19.1160 rna-evm.model.Chr19.1160 Chr19 37983082 37984110 uncharacterized protein nan nan
gene-evm.TU.Chr19.1161 rna-evm.model.Chr19.1161 Chr19 38020640 38021588 PREDICTED: CD109 antigen nan K19619
gene-evm.TU.Chr19.1163 rna-evm.model.Chr19.1163 Chr19 38191146 38192756 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr19.1164 rna-evm.model.Chr19.1164 Chr19 38192796 38195627 PREDICTED: Pol polyprotein nan K06245
gene-evm.TU.Chr19.1165 rna-evm.model.Chr19.1165 Chr19 38210610 38241058 uncharacterized protein nan K12925
gene-evm.TU.Chr19.117 rna-evm.model.Chr19.117 Chr19 6480992 6499152 uncharacterized protein nan K06449
gene-evm.TU.Chr19.1172 rna-evm.model.Chr19.1172 Chr19 38428590 38433281 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr19.1174 rna-evm.model.Chr19.1174 Chr19 38664283 38667531 PREDICTED: Vertnin nan K19429
gene-evm.TU.Chr19.1179 rna-evm.model.Chr19.1179 Chr19 39057256 39057765 PREDICTED: aminopeptidase N [EC:3.4.11.2] nan K25813

For more detailed data, you can explore the Download section to access the full dataset.