CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1149 rna-evm.model.Chr19.1149 Chr19 37464471 37465628 PREDICTED: Neuronal acetylcholine receptor subunit alpha-9-II GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04814
gene-evm.TU.Chr19.115 rna-evm.model.Chr19.115 Chr19 6454686 6469633 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K06560
gene-evm.TU.Chr19.1150 rna-evm.model.Chr19.1150 Chr19 37476237 37478227 PREDICTED: Sodium-coupled monocarboxylate transporter 1 GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr19.1151 rna-evm.model.Chr19.1151 Chr19 37495828 37497030 PREDICTED: Sodium-coupled monocarboxylate transporter 1 GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr19.1154 rna-evm.model.Chr19.1154 Chr19 37676012 37686079 uncharacterized protein nan nan
gene-evm.TU.Chr19.1155 rna-evm.model.Chr19.1155 Chr19 37682390 37708880 uncharacterized protein nan K14479
gene-evm.TU.Chr19.1156 rna-evm.model.Chr19.1156 Chr19 37769631 37770281 PREDICTED: Probable RNA-directed DNA polymerase from transposon BS nan K14530
gene-evm.TU.Chr19.1157 rna-evm.model.Chr19.1157 Chr19 37770398 37770841 uncharacterized protein nan K23449
gene-evm.TU.Chr19.1158 rna-evm.model.Chr19.1158 Chr19 37957011 37958921 PREDICTED: Mariner Mos1 transposase nan K07494
gene-evm.TU.Chr19.1159 rna-evm.model.Chr19.1159 Chr19 37980091 37982420 PREDICTED: cap1 methyltransferase [EC:2.1.1.57] nan K16777

For more detailed data, you can explore the Download section to access the full dataset.