CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1122 rna-evm.model.Chr19.1122 Chr19 36412667 36414053 PREDICTED: QRFP-like peptide receptor GO:0004930;GO:0004983;GO:0007186;GO:0016020 K08375
gene-evm.TU.Chr19.1124 rna-evm.model.Chr19.1124 Chr19 36574090 36582050 PREDICTED: chondroitin 4-sulfotransferase 13 [EC:2.8.2.5] GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr19.1125 rna-evm.model.Chr19.1125 Chr19 36589929 36694386 uncharacterized protein nan nan
gene-evm.TU.Chr19.1126 rna-evm.model.Chr19.1126 Chr19 36701929 36707461 PREDICTED: tensin nan nan
gene-evm.TU.Chr19.1128 rna-evm.model.Chr19.1128 Chr19 36729879 36751638 PREDICTED: Protein ERGIC-53 GO:0005537;GO:0006888;GO:0016020 K10080
gene-evm.TU.Chr19.1129 rna-evm.model.Chr19.1129 Chr19 36765511 36775837 uncharacterized protein nan nan
gene-evm.TU.Chr19.113 rna-evm.model.Chr19.113 Chr19 6431630 6432722 PREDICTED: protein kinase D [EC:2.7.11.13] nan K06679
gene-evm.TU.Chr19.1131 rna-evm.model.Chr19.1131.2 Chr19 36854620 36857418 uncharacterized protein nan K20413
gene-evm.TU.Chr19.1133 rna-evm.model.Chr19.1133 Chr19 36864735 36865400 uncharacterized protein nan K02243
gene-evm.TU.Chr19.1134 rna-evm.model.Chr19.1134 Chr19 36866002 36867899 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan

For more detailed data, you can explore the Download section to access the full dataset.