CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.111 rna-evm.model.Chr19.111 Chr19 6369217 6399063 PREDICTED: Alpha-mannosidase 2x GO:0004559;GO:0006013 K01231
gene-evm.TU.Chr19.1111 rna-evm.model.Chr19.1111 Chr19 36020661 36021718 PREDICTED: Carbohydrate sulfotransferase 13 GO:0008146;GO:0016020;GO:0016051 K07779
gene-evm.TU.Chr19.1112 rna-evm.model.Chr19.1112 Chr19 36022588 36028998 uncharacterized protein nan K10574
gene-evm.TU.Chr19.1113 rna-evm.model.Chr19.1113 Chr19 36035017 36040742 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr19.1114 rna-evm.model.Chr19.1114 Chr19 36056427 36057482 PREDICTED: Glycoprotein 3-alpha-L-fucosyltransferase A GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr19.1115 rna-evm.model.Chr19.1115 Chr19 36061338 36084647 PREDICTED: Probable serine/threonine-protein kinase DDB_G0267514 GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr19.1117 rna-evm.model.Chr19.1117 Chr19 36138390 36155469 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr19.1118 rna-evm.model.Chr19.1118 Chr19 36161083 36188350 PREDICTED: Thrombospondin-1 nan K16857
gene-evm.TU.Chr19.1119 rna-evm.model.Chr19.1119 Chr19 36196472 36253131 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr19.1121 rna-evm.model.Chr19.1121 Chr19 36405458 36406210 PREDICTED: QRFP-like peptide receptor GO:0004930;GO:0004983;GO:0007186;GO:0016020 K08378

For more detailed data, you can explore the Download section to access the full dataset.