CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.324 rna-evm.model.Chr1.324 Chr1 9583535 9590421 PREDICTED: Spartin nan K19366
gene-evm.TU.Chr1.325 rna-evm.model.Chr1.325 Chr1 9600194 9605597 PREDICTED: Polyubiquitin-C GO:0005515 K08770
gene-evm.TU.Chr1.326 rna-evm.model.Chr1.326 Chr1 9607439 9627534 PREDICTED: Calnexin GO:0005509;GO:0005783;GO:0006457;GO:0051082 K08054
gene-evm.TU.Chr1.327 rna-evm.model.Chr1.327 Chr1 9631748 9752770 PREDICTED: Protein Shroom3 GO:0005515;GO:0032401;GO:0045176;GO:0051015 K18625
gene-evm.TU.Chr1.328 rna-evm.model.Chr1.328 Chr1 9761850 9771398 PREDICTED: Protein YIPF6 GO:0016020 K22943
gene-evm.TU.Chr1.329 rna-evm.model.Chr1.329 Chr1 9775725 9790489 PREDICTED: Coiled-coil domain-containing protein 134 nan K25417
gene-evm.TU.Chr1.33 rna-evm.model.Chr1.33 Chr1 1162015 1168523 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.330 rna-evm.model.Chr1.330 Chr1 9798648 9804773 uncharacterized protein nan K12026
gene-evm.TU.Chr1.331 rna-evm.model.Chr1.331 Chr1 9818129 9840168 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.334 rna-evm.model.Chr1.334 Chr1 9904190 9915696 PREDICTED: Heat shock 70 kDa protein 12B nan nan

For more detailed data, you can explore the Download section to access the full dataset.