CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.375 rna-evm.model.Chr1.375 Chr1 10693613 10696730 uncharacterized protein GO:0005515 K09633
gene-evm.TU.Chr1.376 rna-evm.model.Chr1.376 Chr1 10698357 10706216 uncharacterized protein nan K06546
gene-evm.TU.Chr1.377 rna-evm.model.Chr1.377 Chr1 10720424 10730727 PREDICTED: Ras-related protein Rab-9A GO:0003924;GO:0005525 K07899
gene-evm.TU.Chr1.378 rna-evm.model.Chr1.378 Chr1 10742452 10742796 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan K10887
gene-evm.TU.Chr1.379 rna-evm.model.Chr1.379 Chr1 10745246 10750674 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 GO:0006351;GO:0046983 K03020
gene-evm.TU.Chr1.38 rna-evm.model.Chr1.38 Chr1 1372765 1386242 PREDICTED: Carbonic anhydrase-related protein 10 GO:0004089;GO:0008270 K01672
gene-evm.TU.Chr1.380 rna-evm.model.Chr1.380 Chr1 10750771 10764661 PREDICTED: Vesicle-associated membrane protein 7 GO:0016020;GO:0016192 K08515
gene-evm.TU.Chr1.382 rna-evm.model.Chr1.382 Chr1 10770385 10808935 PREDICTED: Thymosin beta GO:0003779;GO:0003785;GO:0007015 K05764
gene-evm.TU.Chr1.383 rna-evm.model.Chr1.383 Chr1 10812032 10827398 PREDICTED: Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase GO:0005783;GO:0005789;GO:0006490;GO:0016758;GO:0042283 K03849
gene-evm.TU.Chr1.384 rna-evm.model.Chr1.384 Chr1 10864574 10881818 PREDICTED: Guanylate cyclase soluble subunit beta-1 GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0020037;GO:0035556 K12319

For more detailed data, you can explore the Download section to access the full dataset.