CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.363 rna-evm.model.Chr1.363 Chr1 10354947 10367517 uncharacterized protein nan K24117
gene-evm.TU.Chr1.364 rna-evm.model.Chr1.364 Chr1 10368707 10400830 PREDICTED: Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B nan K00738
gene-evm.TU.Chr1.365 rna-evm.model.Chr1.365 Chr1 10420905 10425294 PREDICTED: protein rolling stone-like nan nan
gene-evm.TU.Chr1.366 rna-evm.model.Chr1.366 Chr1 10428990 10439856 PREDICTED: ATP-dependent DNA helicase Q5 GO:0003676;GO:0005524 K10902
gene-evm.TU.Chr1.368 rna-evm.model.Chr1.368 Chr1 10470274 10488163 PREDICTED: Protocadherin-11 X-linked GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.37 rna-evm.model.Chr1.37 Chr1 1231765 1270115 uncharacterized protein GO:0016020;GO:0016125;GO:0047750 K01824
gene-evm.TU.Chr1.370 rna-evm.model.Chr1.370 Chr1 10522835 10526253 PREDICTED: Cholinesterase nan K03927
gene-evm.TU.Chr1.371 rna-evm.model.Chr1.371 Chr1 10575526 10615006 PREDICTED: Protocadherin-9 GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.372 rna-evm.model.Chr1.372 Chr1 10657840 10669423 PREDICTED: Protocadherin-11 X-linked GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.374 rna-evm.model.Chr1.374 Chr1 10681070 10684229 PREDICTED: Genome polyprotein nan K00983

For more detailed data, you can explore the Download section to access the full dataset.