CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.335 rna-evm.model.Chr1.335 Chr1 9915721 9937350 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.336 rna-evm.model.Chr1.336 Chr1 9950910 9954668 PREDICTED: E3 ubiquitin-protein ligase TRIM33 nan K12026
gene-evm.TU.Chr1.337 rna-evm.model.Chr1.337 Chr1 9969211 9985921 PREDICTED: Neurotrypsin GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr1.338 rna-evm.model.Chr1.338 Chr1 9991978 10021246 PREDICTED: Proton channel OtopLc nan K26153
gene-evm.TU.Chr1.339 rna-evm.model.Chr1.339 Chr1 10027040 10029728 uncharacterized protein nan K09666
gene-evm.TU.Chr1.34 rna-evm.model.Chr1.34 Chr1 1173866 1177264 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.340 rna-evm.model.Chr1.340 Chr1 10032878 10034763 PREDICTED: Tripartite motif-containing protein 3 GO:0005515 K12035
gene-evm.TU.Chr1.341 rna-evm.model.Chr1.341 Chr1 10041011 10042045 PREDICTED: Collagen-like protein 7 nan K16630
gene-evm.TU.Chr1.345 rna-evm.model.Chr1.345 Chr1 10092357 10093008 PREDICTED: Disintegrin and metalloproteinase domain-containing protein 29 nan K05173
gene-evm.TU.Chr1.346 rna-evm.model.Chr1.346 Chr1 10093035 10093709 PREDICTED: Aggrecan core protein nan K04423

For more detailed data, you can explore the Download section to access the full dataset.