CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.287 rna-evm.model.Chr1.287 Chr1 8832599 8833228 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr1.2870 rna-evm.model.Chr1.2870 Chr1 89711685 89712560 uncharacterized protein nan K24341
gene-evm.TU.Chr1.2873 rna-evm.model.Chr1.2873 Chr1 89997621 89998133 PREDICTED: cysteinyl leukotriene receptor 1 nan K05053
gene-evm.TU.Chr1.2874 rna-evm.model.Chr1.2874 Chr1 90072106 90111773 PREDICTED: CD109 antigen GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr1.2875 rna-evm.model.Chr1.2875 Chr1 90129266 90171097 PREDICTED: CD109 antigen GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr1.2878 rna-evm.model.Chr1.2878 Chr1 90375850 90384051 PREDICTED: Sodium-dependent phosphate transporter 1 GO:0005315;GO:0006817;GO:0016020 K14640
gene-evm.TU.Chr1.2881 rna-evm.model.Chr1.2881 Chr1 90426304 90428824 PREDICTED: serine palmitoyltransferase [EC:2.3.1.50] nan K11379
gene-evm.TU.Chr1.2882 rna-evm.model.Chr1.2882 Chr1 90447272 90456887 PREDICTED: Polycystin-2 GO:0005509;GO:0016020 K04987
gene-evm.TU.Chr1.2884 rna-evm.model.Chr1.2884 Chr1 90524650 90530206 PREDICTED: MAM and LDL-receptor class A domain-containing protein 2 (Fragment) GO:0016020 K24831
gene-evm.TU.Chr1.2885 rna-evm.model.Chr1.2885 Chr1 90599999 90600619 uncharacterized protein nan K13412

For more detailed data, you can explore the Download section to access the full dataset.