CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.301 rna-evm.model.Chr1.301 Chr1 9164151 9165438 PREDICTED: ATP-dependent DNA helicase RecQ GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr1.302 rna-evm.model.Chr1.302 Chr1 9214740 9216054 PREDICTED: Serine/threonine-protein phosphatase with EF-hands 2 nan K13807
gene-evm.TU.Chr1.303 rna-evm.model.Chr1.303 Chr1 9218874 9226307 PREDICTED: Serine/threonine-protein phosphatase with EF-hands 1 GO:0005509;GO:0016787 K13807
gene-evm.TU.Chr1.304 rna-evm.model.Chr1.304 Chr1 9227817 9233652 PREDICTED: Alpha-galactosidase A GO:0004553;GO:0005975 K01204
gene-evm.TU.Chr1.305 rna-evm.model.Chr1.305 Chr1 9235678 9254325 PREDICTED: SLAIN motif-containing protein 2 nan K16580
gene-evm.TU.Chr1.306 rna-evm.model.Chr1.306 Chr1 9258892 9331055 PREDICTED: calpain-5 [EC:3.4.22.-] nan nan
gene-evm.TU.Chr1.308 rna-evm.model.Chr1.308 Chr1 9336445 9345477 uncharacterized protein nan K06675
gene-evm.TU.Chr1.309 rna-evm.model.Chr1.309 Chr1 9345534 9374443 uncharacterized protein nan K24394
gene-evm.TU.Chr1.310 rna-evm.model.Chr1.310 Chr1 9375797 9392042 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K10421
gene-evm.TU.Chr1.311 rna-evm.model.Chr1.311 Chr1 9405015 9421668 PREDICTED: Laminin subunit alpha-2 GO:0005741;GO:0035694 K22257

For more detailed data, you can explore the Download section to access the full dataset.