CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.348 rna-evm.model.Chr1.348 Chr1 10157690 10158315 PREDICTED: WD repeat-containing protein 22 nan K01152
gene-evm.TU.Chr1.350 rna-evm.model.Chr1.350 Chr1 10159246 10161974 PREDICTED: adenylate kinase [EC:2.7.4.3] nan K20394
gene-evm.TU.Chr1.351 rna-evm.model.Chr1.351 Chr1 10169170 10172008 PREDICTED: collagen, type VIII, alpha nan K23284
gene-evm.TU.Chr1.355 rna-evm.model.Chr1.355 Chr1 10209281 10210732 uncharacterized protein nan nan
gene-evm.TU.Chr1.356 rna-evm.model.Chr1.356 Chr1 10232611 10240960 uncharacterized protein nan K16957
gene-evm.TU.Chr1.357 rna-evm.model.Chr1.357 Chr1 10260842 10269707 uncharacterized protein nan nan
gene-evm.TU.Chr1.358 rna-evm.model.Chr1.358 Chr1 10276318 10281316 uncharacterized protein nan K16957
gene-evm.TU.Chr1.359 rna-evm.model.Chr1.359 Chr1 10304704 10320318 uncharacterized protein nan K18033
gene-evm.TU.Chr1.36 rna-evm.model.Chr1.36 Chr1 1202269 1213638 PREDICTED: major antigen-like nan K08330
gene-evm.TU.Chr1.362 rna-evm.model.Chr1.362 Chr1 10349778 10356163 PREDICTED: Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase GO:0016020;GO:0016125;GO:0047750 K01824

For more detailed data, you can explore the Download section to access the full dataset.