CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2888 rna-evm.model.Chr1.2888 Chr1 90605387 90614567 PREDICTED: perilipin-4 nan nan
gene-evm.TU.Chr1.289 rna-evm.model.Chr1.289 Chr1 8859424 8863238 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr1.290 rna-evm.model.Chr1.290 Chr1 8863245 8864570 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr1.292 rna-evm.model.Chr1.292 Chr1 8878104 8880205 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr1.295 rna-evm.model.Chr1.295 Chr1 9094251 9133668 PREDICTED: Ovostatin GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr1.296 rna-evm.model.Chr1.296 Chr1 9156181 9156651 uncharacterized protein nan K25039
gene-evm.TU.Chr1.297 rna-evm.model.Chr1.297 Chr1 9156951 9159546 uncharacterized protein nan nan
gene-evm.TU.Chr1.298 rna-evm.model.Chr1.298 Chr1 9159793 9160540 uncharacterized protein nan nan
gene-evm.TU.Chr1.299 rna-evm.model.Chr1.299 Chr1 9161550 9162756 PREDICTED: serine palmitoyltransferase [EC:2.3.1.50] nan nan
gene-evm.TU.Chr1.300 rna-evm.model.Chr1.300 Chr1 9162906 9164054 PREDICTED: Werner syndrome ATP-dependent helicase homolog nan K03654

For more detailed data, you can explore the Download section to access the full dataset.