CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.312 rna-evm.model.Chr1.312 Chr1 9424297 9436427 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] GO:0005741;GO:0035694 K10421
gene-evm.TU.Chr1.313 rna-evm.model.Chr1.313 Chr1 9437316 9442874 PREDICTED: Cytochrome P450 2D10 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr1.314 rna-evm.model.Chr1.314 Chr1 9445951 9458436 PREDICTED: Proton channel OtopLc nan K26153
gene-evm.TU.Chr1.315 rna-evm.model.Chr1.315 Chr1 9465160 9474600 PREDICTED: F-box/WD repeat-containing protein 5 GO:0005515 K10263
gene-evm.TU.Chr1.316 rna-evm.model.Chr1.316 Chr1 9475453 9479040 uncharacterized protein nan K18342
gene-evm.TU.Chr1.317 rna-evm.model.Chr1.317 Chr1 9496615 9504827 PREDICTED: Alpha-galactosidase A GO:0004553;GO:0005975 K01204
gene-evm.TU.Chr1.318 rna-evm.model.Chr1.318 Chr1 9510225 9510999 uncharacterized protein nan nan
gene-evm.TU.Chr1.319 rna-evm.model.Chr1.319 Chr1 9522128 9524126 uncharacterized protein nan K12026
gene-evm.TU.Chr1.32 rna-evm.model.Chr1.32 Chr1 1152895 1159238 PREDICTED: myosin heavy chain nan K03529
gene-evm.TU.Chr1.323 rna-evm.model.Chr1.323 Chr1 9572890 9583424 PREDICTED: Transmembrane protein 184C nan K14360

For more detailed data, you can explore the Download section to access the full dataset.