CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1093 rna-evm.model.Chr19.1093 Chr19 35618332 35619009 uncharacterized protein nan K18554
gene-evm.TU.Chr19.1095 rna-evm.model.Chr19.1095 Chr19 35647371 35647773 uncharacterized protein nan nan
gene-evm.TU.Chr19.1096 rna-evm.model.Chr19.1096 Chr19 35647873 35648659 PREDICTED: kelch-like protein 2/3 nan K21923
gene-evm.TU.Chr19.1099 rna-evm.model.Chr19.1099 Chr19 35724780 35746547 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr19.11 rna-evm.model.Chr19.11 Chr19 534432 545364 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan K18004
gene-evm.TU.Chr19.1100 rna-evm.model.Chr19.1100 Chr19 35752851 35782729 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr19.1106 rna-evm.model.Chr19.1106 Chr19 35858490 35860172 PREDICTED: Zinc finger protein 182 GO:0003676 K09228
gene-evm.TU.Chr19.1107 rna-evm.model.Chr19.1107 Chr19 35868866 35889453 uncharacterized protein nan K23820
gene-evm.TU.Chr19.1108 rna-evm.model.Chr19.1108 Chr19 35890150 35913028 PREDICTED: DNA-binding protein RFX5 GO:0003677;GO:0003700;GO:0006355 K09175
gene-evm.TU.Chr19.1109 rna-evm.model.Chr19.1109 Chr19 35977867 35994878 PREDICTED: Testis-expressed protein 9 nan K16477

For more detailed data, you can explore the Download section to access the full dataset.