CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1046 rna-evm.model.Chr19.1046 Chr19 34493858 34512949 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K03900
gene-evm.TU.Chr19.1047 rna-evm.model.Chr19.1047 Chr19 34526883 34562792 PREDICTED: CUB and sushi domain-containing protein nan K05147
gene-evm.TU.Chr19.1049 rna-evm.model.Chr19.1049 Chr19 34590318 34637911 PREDICTED: CUB and sushi domain-containing protein nan K05147
gene-evm.TU.Chr19.105 rna-evm.model.Chr19.105 Chr19 6340982 6341638 uncharacterized protein nan K12063
gene-evm.TU.Chr19.1050 rna-evm.model.Chr19.1050 Chr19 34647328 34679700 PREDICTED: RalA-binding protein 1 GO:0005096;GO:0007165;GO:0007264;GO:0031267 K08773
gene-evm.TU.Chr19.1051 rna-evm.model.Chr19.1051 Chr19 34685443 34706253 PREDICTED: Synphilin-1 GO:0005515 K04558
gene-evm.TU.Chr19.1052 rna-evm.model.Chr19.1052 Chr19 34713639 34744357 PREDICTED: Meiosis-specific nuclear structural protein 1 nan K22023
gene-evm.TU.Chr19.1054 rna-evm.model.Chr19.1054 Chr19 34767744 34779549 PREDICTED: Protoporphyrinogen oxidase GO:0005524;GO:0016020;GO:0016491;GO:0042626;GO:0055085;GO:0055114 K00231
gene-evm.TU.Chr19.1055 rna-evm.model.Chr19.1055 Chr19 34781192 34786095 uncharacterized protein nan K05667
gene-evm.TU.Chr19.1056 rna-evm.model.Chr19.1056 Chr19 34785821 34822421 PREDICTED: Multidrug resistance-associated protein 1 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05667

For more detailed data, you can explore the Download section to access the full dataset.