CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1059 rna-evm.model.Chr19.1059 Chr19 34841316 34855611 PREDICTED: probable U2 small nuclear ribonucleoprotein A' GO:0005515 K24399
gene-evm.TU.Chr19.1064_evm.TU.Chr19.1061 rna-evm.model.Chr19.1064_evm.model.Chr19.1061 Chr19 34864822 34951540 PREDICTED: Scavenger receptor cysteine-rich type 1 protein M130 GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr19.1065 rna-evm.model.Chr19.1065 Chr19 34961145 34983241 PREDICTED: Scavenger receptor cysteine-rich type 1 protein M130 GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr19.1067_evm.TU.Chr19.1066 rna-evm.model.Chr19.1067_evm.model.Chr19.1066 Chr19 34993671 35026124 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr19.1068 rna-evm.model.Chr19.1068 Chr19 35024160 35029674 PREDICTED: Protein mab-21 nan K23092
gene-evm.TU.Chr19.1069 rna-evm.model.Chr19.1069 Chr19 35102783 35192926 PREDICTED: Neogenin (Fragment) GO:0005515;GO:0005886;GO:0007399;GO:0007411;GO:0016020;GO:0030513;GO:0038023;GO:0055072 K06766
gene-evm.TU.Chr19.107 rna-evm.model.Chr19.107 Chr19 6346549 6347668 PREDICTED: Replication protein A 70 kDa DNA-binding subunit C GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr19.1074 rna-evm.model.Chr19.1074 Chr19 35314553 35321460 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr19.1075 rna-evm.model.Chr19.1075 Chr19 35333487 35337069 PREDICTED: Beta-1,4-galactosyltransferase galt-1 nan K14434
gene-evm.TU.Chr19.1076 rna-evm.model.Chr19.1076 Chr19 35360493 35361460 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.