CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1034 rna-evm.model.Chr19.1034 Chr19 34087019 34110282 PREDICTED: Fumarylacetoacetase GO:0003824;GO:0004334;GO:0009072 K01555
gene-evm.TU.Chr19.1035 rna-evm.model.Chr19.1035 Chr19 34158762 34166364 PREDICTED: leucine-rich repeat protein SHOC2 nan K18547
gene-evm.TU.Chr19.1036 rna-evm.model.Chr19.1036 Chr19 34179993 34191968 uncharacterized protein nan nan
gene-evm.TU.Chr19.1037 rna-evm.model.Chr19.1037 Chr19 34212231 34234814 uncharacterized protein nan nan
gene-evm.TU.Chr19.1038 rna-evm.model.Chr19.1038 Chr19 34243795 34300895 PREDICTED: Colorectal mutant cancer protein GO:0005509 K26734
gene-evm.TU.Chr19.1039 rna-evm.model.Chr19.1039 Chr19 34308619 34325209 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K23820
gene-evm.TU.Chr19.104 rna-evm.model.Chr19.104 Chr19 6340108 6340935 PREDICTED: muscle M-line assembly protein unc-89-like nan K16645
gene-evm.TU.Chr19.1040 rna-evm.model.Chr19.1040 Chr19 34332271 34360462 PREDICTED: mucin-2 nan K24517
gene-evm.TU.Chr19.1041 rna-evm.model.Chr19.1041 Chr19 34364248 34364776 uncharacterized protein nan K00668
gene-evm.TU.Chr19.1045 rna-evm.model.Chr19.1045 Chr19 34416212 34463685 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K24517

For more detailed data, you can explore the Download section to access the full dataset.