CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1022 rna-evm.model.Chr19.1022 Chr19 33897440 33911461 PREDICTED: Sodium/solute symporter nan K04008
gene-evm.TU.Chr19.1024 rna-evm.model.Chr19.1024 Chr19 33939092 33948327 PREDICTED: Efetin nan K04008
gene-evm.TU.Chr19.1025 rna-evm.model.Chr19.1025 Chr19 33968753 33970522 PREDICTED: Collagen alpha-2(VIII) chain nan K23284
gene-evm.TU.Chr19.1026 rna-evm.model.Chr19.1026 Chr19 33975703 33976717 PREDICTED: Cerebellin-3 nan K23284
gene-evm.TU.Chr19.1027 rna-evm.model.Chr19.1027 Chr19 33984753 33985763 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K23284
gene-evm.TU.Chr19.1029 rna-evm.model.Chr19.1029 Chr19 33998381 33999617 PREDICTED: Cerebellin-3 nan K23284
gene-evm.TU.Chr19.1030 rna-evm.model.Chr19.1030 Chr19 34008145 34009371 PREDICTED: Cerebellin-3 nan K23284
gene-evm.TU.Chr19.1031 rna-evm.model.Chr19.1031 Chr19 34014315 34015418 PREDICTED: Cerebellin-3 nan K23284
gene-evm.TU.Chr19.1032 rna-evm.model.Chr19.1032 Chr19 34033433 34035216 uncharacterized protein nan nan
gene-evm.TU.Chr19.1033 rna-evm.model.Chr19.1033 Chr19 34043921 34075990 PREDICTED: Neurogenic locus notch homolog protein 1 GO:0005509 K20994

For more detailed data, you can explore the Download section to access the full dataset.