CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.995 rna-evm.model.Chr18.995 Chr18 37835335 37846649 PREDICTED: Thrombospondin-1 nan K16857
gene-evm.TU.Chr18.996 rna-evm.model.Chr18.996 Chr18 37852359 37871754 PREDICTED: Carnosine synthase 1 GO:0005524;GO:0046872 K14755
gene-evm.TU.Chr18.999 rna-evm.model.Chr18.999 Chr18 37920950 37955380 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698
gene-evm.TU.Chr19.1 rna-evm.model.Chr19.1 Chr19 3097 16520 uncharacterized protein nan K09976
gene-evm.TU.Chr19.1001 rna-evm.model.Chr19.1001 Chr19 33243115 33251985 PREDICTED: Collagen alpha-1(X) chain nan K23284
gene-evm.TU.Chr19.1002 rna-evm.model.Chr19.1002 Chr19 33267196 33271449 PREDICTED: Collagen alpha-1(X) chain nan K23284
gene-evm.TU.Chr19.1003 rna-evm.model.Chr19.1003 Chr19 33276667 33282867 PREDICTED: Collagen alpha-1(VIII) chain nan K23284
gene-evm.TU.Chr19.1004 rna-evm.model.Chr19.1004 Chr19 33290657 33294909 PREDICTED: Collagen alpha-1(X) chain nan K23284
gene-evm.TU.Chr19.1005 rna-evm.model.Chr19.1005 Chr19 33299028 33305377 PREDICTED: Complement C1q tumor necrosis factor-related protein 5 nan K23284
gene-evm.TU.Chr19.1006 rna-evm.model.Chr19.1006 Chr19 33313481 33318981 PREDICTED: Complement C1q-like protein 2 nan K23284

For more detailed data, you can explore the Download section to access the full dataset.