CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.1007 rna-evm.model.Chr19.1007 Chr19 33326270 33328083 PREDICTED: growth hormone secretagogue receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr19.1008 rna-evm.model.Chr19.1008 Chr19 33337217 33342068 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr19.1010 rna-evm.model.Chr19.1010 Chr19 33658683 33672786 PREDICTED: Mucin-like protein (Fragment) nan K16857
gene-evm.TU.Chr19.1013 rna-evm.model.Chr19.1013 Chr19 33739685 33742198 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr19.1014 rna-evm.model.Chr19.1014 Chr19 33750435 33752863 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr19.1016 rna-evm.model.Chr19.1016 Chr19 33781589 33788388 PREDICTED: Plasminogen nan K01315
gene-evm.TU.Chr19.1017 rna-evm.model.Chr19.1017 Chr19 33791120 33843449 PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 GO:0000398;GO:0006397;GO:0046540 K12843
gene-evm.TU.Chr19.1018 rna-evm.model.Chr19.1018 Chr19 33857005 33860177 PREDICTED: Beta-1,4-galactosyltransferase galt-1 nan K14434
gene-evm.TU.Chr19.1019 rna-evm.model.Chr19.1019 Chr19 33866981 33869784 PREDICTED: Beta-1,4-galactosyltransferase galt-1 nan K14434
gene-evm.TU.Chr19.1020 rna-evm.model.Chr19.1020 Chr19 33876241 33878370 PREDICTED: Beta-1,4-galactosyltransferase galt-1 nan K14434

For more detailed data, you can explore the Download section to access the full dataset.