CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.979 rna-evm.model.Chr18.979 Chr18 37616580 37620023 PREDICTED: Mitochondrial assembly of ribosomal large subunit protein 1 nan K25803
gene-evm.TU.Chr18.982 rna-evm.model.Chr18.982 Chr18 37671063 37676917 PREDICTED: Coiled-coil domain-containing protein 15 nan nan
gene-evm.TU.Chr18.985 rna-evm.model.Chr18.985 Chr18 37679764 37680228 PREDICTED: mediator of RNA polymerase II transcription subunit 4 nan K21530
gene-evm.TU.Chr18.986 rna-evm.model.Chr18.986 Chr18 37685004 37691469 PREDICTED: Histone H3-like centromeric protein A GO:0000786;GO:0003677 K11495
gene-evm.TU.Chr18.988 rna-evm.model.Chr18.988 Chr18 37698753 37705647 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12035
gene-evm.TU.Chr18.99 rna-evm.model.Chr18.99 Chr18 4846331 4847273 PREDICTED: ATP-binding protein nan K03556
gene-evm.TU.Chr18.990 rna-evm.model.Chr18.990 Chr18 37710662 37721894 PREDICTED: Acyl-CoA 6-desaturase GO:0006629 K10226
gene-evm.TU.Chr18.992 rna-evm.model.Chr18.992.1 Chr18 37784403 37800887 uncharacterized protein nan nan
gene-evm.TU.Chr18.993 rna-evm.model.Chr18.993 Chr18 37807485 37827682 PREDICTED: Protein CASC3 GO:0003723;GO:0006397;GO:0035145 K14323
gene-evm.TU.Chr18.994 rna-evm.model.Chr18.994 Chr18 37832408 37834836 PREDICTED: Protein PLANT CADMIUM RESISTANCE 3 nan nan

For more detailed data, you can explore the Download section to access the full dataset.