CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.968 rna-evm.model.Chr18.968 Chr18 37095624 37161144 PREDICTED: Supervillin GO:0003779;GO:0007010;GO:0051015 K10369
gene-evm.TU.Chr18.969 rna-evm.model.Chr18.969 Chr18 37171345 37233735 uncharacterized protein nan nan
gene-evm.TU.Chr18.97 rna-evm.model.Chr18.97 Chr18 4841320 4842423 PREDICTED: Serine/threonine-protein kinase CLA4 GO:0004672;GO:0005524;GO:0006468 K19833
gene-evm.TU.Chr18.970 rna-evm.model.Chr18.970 Chr18 37240444 37250647 PREDICTED: transmembrane protein 233-like GO:0016020 K23896
gene-evm.TU.Chr18.971 rna-evm.model.Chr18.971 Chr18 37258061 37279934 PREDICTED: Neuronal acetylcholine receptor subunit alpha-10 GO:0004521;GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr18.972 rna-evm.model.Chr18.972 Chr18 37280088 37290605 PREDICTED: Putative protein FAM47C nan K09112
gene-evm.TU.Chr18.973 rna-evm.model.Chr18.973 Chr18 37305096 37305392 PREDICTED: nesprin-3 nan nan
gene-evm.TU.Chr18.974 rna-evm.model.Chr18.974 Chr18 37371716 37403360 PREDICTED: Retinoic acid receptor alpha GO:0003677;GO:0003700;GO:0003707;GO:0004879;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08528
gene-evm.TU.Chr18.975_evm.TU.Chr18.977 rna-evm.model.Chr18.975_evm.model.Chr18.977 Chr18 37432123 37517639 PREDICTED: Armadillo repeat-containing protein 8 GO:0005515 K23336
gene-evm.TU.Chr18.978 rna-evm.model.Chr18.978 Chr18 37526768 37551614 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.