CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.284 rna-evm.model.Chr1.284 Chr1 8761302 8792006 PREDICTED: zinc finger protein ZFAT-like, partial nan K06449
gene-evm.TU.Chr1.2840 rna-evm.model.Chr1.2840 Chr1 88942996 88943478 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr1.2841 rna-evm.model.Chr1.2841 Chr1 88943502 88943828 uncharacterized protein nan nan
gene-evm.TU.Chr1.2843 rna-evm.model.Chr1.2843 Chr1 88998516 88999958 uncharacterized protein nan K23428
gene-evm.TU.Chr1.2844 rna-evm.model.Chr1.2844 Chr1 89067538 89119896 PREDICTED: Eukaryotic translation initiation factor 5B nan K03243
gene-evm.TU.Chr1.2846 rna-evm.model.Chr1.2846 Chr1 89153955 89217267 PREDICTED: Eukaryotic translation initiation factor 5B GO:0003924;GO:0005525 K03243
gene-evm.TU.Chr1.2847 rna-evm.model.Chr1.2847 Chr1 89237041 89237880 PREDICTED: Protein sprouty homolog 2 GO:0007275;GO:0009966;GO:0016020 K17384
gene-evm.TU.Chr1.2848 rna-evm.model.Chr1.2848 Chr1 89245909 89264913 PREDICTED: Eukaryotic translation initiation factor 5B nan K03243
gene-evm.TU.Chr1.2849 rna-evm.model.Chr1.2849 Chr1 89277229 89288956 PREDICTED: Protein sprouty homolog 3 GO:0007275;GO:0009966;GO:0016020 K17384
gene-evm.TU.Chr1.285 rna-evm.model.Chr1.285 Chr1 8815079 8818971 PREDICTED: Periostin nan K19519

For more detailed data, you can explore the Download section to access the full dataset.