CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.931 rna-evm.model.Chr18.931 Chr18 35348735 35349070 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr18.932 rna-evm.model.Chr18.932 Chr18 35349868 35350901 PREDICTED: tripartite motif-containing protein 2/3 GO:0008270 K08881
gene-evm.TU.Chr18.933 rna-evm.model.Chr18.933 Chr18 35412227 35413152 PREDICTED: Protein GVQW3 nan K11433
gene-evm.TU.Chr18.934 rna-evm.model.Chr18.934 Chr18 35435577 35436494 PREDICTED: Snaclec mamushigin subunit alpha nan K25727
gene-evm.TU.Chr18.935 rna-evm.model.Chr18.935 Chr18 35444056 35444700 PREDICTED: Snaclec mamushigin subunit alpha nan K25727
gene-evm.TU.Chr18.936 rna-evm.model.Chr18.936 Chr18 35450188 35451327 PREDICTED: Thyrotropin-releasing hormone receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr18.937 rna-evm.model.Chr18.937 Chr18 35702984 35727895 PREDICTED: Bile salt sulfotransferase GO:0008146 K22523
gene-evm.TU.Chr18.938 rna-evm.model.Chr18.938 Chr18 35828278 35853857 uncharacterized protein nan K15301
gene-evm.TU.Chr18.939 rna-evm.model.Chr18.939 Chr18 36211159 36359580 PREDICTED: Tensin-1 GO:0005515 K18080
gene-evm.TU.Chr18.941_evm.TU.Chr18.950 rna-evm.model.Chr18.941_evm.model.Chr18.950 Chr18 36220035 36586544 PREDICTED: Tensin-1 GO:0035556 K18080

For more detailed data, you can explore the Download section to access the full dataset.