CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.905 rna-evm.model.Chr18.905 Chr18 34901083 34936441 PREDICTED: Prolyl 4-hydroxylase subunit alpha-3 GO:0004656;GO:0005515;GO:0005783;GO:0016702;GO:0055114 K00472
gene-evm.TU.Chr18.907 rna-evm.model.Chr18.907 Chr18 34971759 34981716 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr18.908 rna-evm.model.Chr18.908 Chr18 34981745 34982551 PREDICTED: kinesin family member 4/21/27 nan nan
gene-evm.TU.Chr18.911 rna-evm.model.Chr18.911 Chr18 35026961 35037278 PREDICTED: Protocadherin-like wing polarity protein stan GO:0005509;GO:0007156;GO:0016020;GO:0098609 K16669
gene-evm.TU.Chr18.912 rna-evm.model.Chr18.912 Chr18 35089286 35097482 PREDICTED: Protocadherin Fat 1 GO:0005509;GO:0007156;GO:0016020;GO:0098609 K16669
gene-evm.TU.Chr18.915 rna-evm.model.Chr18.915 Chr18 35124656 35131657 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr18.916 rna-evm.model.Chr18.916 Chr18 35131837 35133846 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K26653
gene-evm.TU.Chr18.917 rna-evm.model.Chr18.917 Chr18 35120128 35149757 PREDICTED: Cytosolic 5'-nucleotidase 3A GO:0000287;GO:0005737;GO:0008253 K24242
gene-evm.TU.Chr18.918 rna-evm.model.Chr18.918 Chr18 35161591 35164037 uncharacterized protein nan nan
gene-evm.TU.Chr18.919 rna-evm.model.Chr18.919 Chr18 35175236 35206966 PREDICTED: Ankyrin repeat and IBR domain-containing protein 1 GO:0004842;GO:0005515;GO:0016567 K11967

For more detailed data, you can explore the Download section to access the full dataset.