CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.893 rna-evm.model.Chr18.893 Chr18 34325027 34379600 PREDICTED: Fibropellin-1 GO:0005509 K20994
gene-evm.TU.Chr18.896 rna-evm.model.Chr18.896 Chr18 34464539 34496528 PREDICTED: Rab3 GTPase-activating protein catalytic subunit GO:0005096 K18270
gene-evm.TU.Chr18.897 rna-evm.model.Chr18.897 Chr18 34501688 34502485 PREDICTED: C-type lectin superfamily 17 member A nan K25727
gene-evm.TU.Chr18.898 rna-evm.model.Chr18.898 Chr18 34503983 34513312 uncharacterized protein nan nan
gene-evm.TU.Chr18.90 rna-evm.model.Chr18.90 Chr18 4139399 4145995 PREDICTED: Malate dehydrogenase GO:0016491;GO:0055114 K05884
gene-evm.TU.Chr18.900 rna-evm.model.Chr18.900 Chr18 34528224 34537582 PREDICTED: Elongation factor Ts, mitochondrial GO:0003746;GO:0006414 K02357
gene-evm.TU.Chr18.901 rna-evm.model.Chr18.901 Chr18 34546654 34582919 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698
gene-evm.TU.Chr18.902 rna-evm.model.Chr18.902 Chr18 34613793 34618319 PREDICTED: Ankyrin repeat domain-containing protein 6 GO:0005515 K06694
gene-evm.TU.Chr18.903 rna-evm.model.Chr18.903 Chr18 34713911 34714672 PREDICTED: Neurocan core protein nan K25727
gene-evm.TU.Chr18.904 rna-evm.model.Chr18.904 Chr18 34895774 34897748 PREDICTED: Cephalotocin receptor 1 GO:0004930;GO:0005000;GO:0007186;GO:0016020 K04226

For more detailed data, you can explore the Download section to access the full dataset.