CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.88 rna-evm.model.Chr18.88 Chr18 4057872 4091182 PREDICTED: TNF receptor-associated protein 1 nan K05636
gene-evm.TU.Chr18.882 rna-evm.model.Chr18.882 Chr18 34094270 34096316 PREDICTED: Transposable element Tcb1 transposase nan K07494
gene-evm.TU.Chr18.884 rna-evm.model.Chr18.884 Chr18 34120737 34122144 PREDICTED: Con-Ins Im2 GO:0005179;GO:0005576 K04526
gene-evm.TU.Chr18.885 rna-evm.model.Chr18.885 Chr18 34126880 34131687 PREDICTED: poly [ADP-ribose] polymerase 7/11/12/13 [EC:2.4.2.30] nan K23934
gene-evm.TU.Chr18.886 rna-evm.model.Chr18.886 Chr18 34136660 34145494 PREDICTED: Ras-related protein Rab-13 GO:0003924;GO:0005525;GO:0005802;GO:0006895;GO:0032456;GO:0042742;GO:0045335;GO:0055037;GO:0090382 K07976
gene-evm.TU.Chr18.887 rna-evm.model.Chr18.887 Chr18 34208941 34219340 PREDICTED: Protocadherin Fat 4 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr18.888 rna-evm.model.Chr18.888 Chr18 34224773 34237898 uncharacterized protein nan nan
gene-evm.TU.Chr18.889 rna-evm.model.Chr18.889 Chr18 34244178 34251755 PREDICTED: Transmembrane protein 41A-A nan K27310
gene-evm.TU.Chr18.890 rna-evm.model.Chr18.890 Chr18 34255747 34260527 PREDICTED: poly [ADP-ribose] polymerase 7/11/12/13 [EC:2.4.2.30] nan nan
gene-evm.TU.Chr18.891 rna-evm.model.Chr18.891 Chr18 34277272 34279891 PREDICTED: Poly [ADP-ribose] polymerase 14 GO:0005634;GO:0006915 nan

For more detailed data, you can explore the Download section to access the full dataset.