CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.87 rna-evm.model.Chr18.87 Chr18 4023290 4024853 uncharacterized protein nan K06358
gene-evm.TU.Chr18.870 rna-evm.model.Chr18.870 Chr18 33622041 33627254 uncharacterized protein nan K18545
gene-evm.TU.Chr18.871 rna-evm.model.Chr18.871 Chr18 33628959 33641156 PREDICTED: cytokine receptor domeless nan K19599
gene-evm.TU.Chr18.872 rna-evm.model.Chr18.872 Chr18 33676529 33686489 uncharacterized protein nan K18547
gene-evm.TU.Chr18.873 rna-evm.model.Chr18.873 Chr18 33721829 33722667 uncharacterized protein nan K18547
gene-evm.TU.Chr18.875 rna-evm.model.Chr18.875 Chr18 33751947 33762662 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.876 rna-evm.model.Chr18.876 Chr18 33775450 33788938 PREDICTED: Acetylcholine receptor subunit epsilon GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.877 rna-evm.model.Chr18.877 Chr18 33845449 33903580 PREDICTED: Probable G-protein coupled receptor 158 GO:0004930;GO:0007186;GO:0016020 K08469
gene-evm.TU.Chr18.878 rna-evm.model.Chr18.878 Chr18 33914532 33947401 PREDICTED: Catenin beta GO:0005515;GO:0007155;GO:0045296 K02105
gene-evm.TU.Chr18.879 rna-evm.model.Chr18.879 Chr18 33979251 34001879 PREDICTED: Caprin-2 nan K23284

For more detailed data, you can explore the Download section to access the full dataset.