CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.857 rna-evm.model.Chr18.857 Chr18 33055397 33069765 PREDICTED: Suppressor of cytokine signaling 7 nan K04699
gene-evm.TU.Chr18.858 rna-evm.model.Chr18.858 Chr18 33122471 33134206 PREDICTED: Ecdysone-induced protein 75B, isoform B GO:0003677;GO:0003700;GO:0003707;GO:0004879;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08530
gene-evm.TU.Chr18.859 rna-evm.model.Chr18.859 Chr18 33140624 33141650 uncharacterized protein nan nan
gene-evm.TU.Chr18.86 rna-evm.model.Chr18.86 Chr18 3982159 3984311 uncharacterized protein nan nan
gene-evm.TU.Chr18.860_evm.TU.Chr18.861 rna-evm.model.Chr18.860_evm.model.Chr18.861 Chr18 33202624 33214531 PREDICTED: Neurogenic locus notch homolog protein 3 nan K20994
gene-evm.TU.Chr18.862 rna-evm.model.Chr18.862 Chr18 33219488 33230896 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.863 rna-evm.model.Chr18.863 Chr18 33234501 33248473 PREDICTED: Acetylcholine receptor subunit alpha-like 2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.865_evm.TU.Chr18.864 rna-evm.model.Chr18.865_evm.model.Chr18.864 Chr18 33270213 33363593 PREDICTED: Cytochrome P450 2D10 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr18.867 rna-evm.model.Chr18.867 Chr18 33506088 33561920 PREDICTED: Acetylcholine receptor subunit beta GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr18.869 rna-evm.model.Chr18.869 Chr18 33610592 33618602 uncharacterized protein nan K18547

For more detailed data, you can explore the Download section to access the full dataset.