CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.845 rna-evm.model.Chr18.845 Chr18 32245532 32277205 PREDICTED: Interferon-induced helicase C domain-containing protein 1 nan K12646
gene-evm.TU.Chr18.848 rna-evm.model.Chr18.848 Chr18 32545872 32546931 PREDICTED: zinc finger CCCH domain-containing protein 15 homolog nan K19657
gene-evm.TU.Chr18.849 rna-evm.model.Chr18.849 Chr18 32550073 32550800 PREDICTED: Hepatic lectin nan K06468
gene-evm.TU.Chr18.85 rna-evm.model.Chr18.85 Chr18 3919317 3920338 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K09549
gene-evm.TU.Chr18.850 rna-evm.model.Chr18.850 Chr18 32553153 32556529 PREDICTED: C-type mannose receptor 2 nan K06468
gene-evm.TU.Chr18.851 rna-evm.model.Chr18.851 Chr18 32567999 32573228 PREDICTED: Tyrosine-protein kinase transmembrane receptor Ror GO:0004672;GO:0004713;GO:0005524;GO:0006468 K04360
gene-evm.TU.Chr18.852 rna-evm.model.Chr18.852 Chr18 32615236 32739872 PREDICTED: Inactive tyrosine-protein kinase transmembrane receptor ROR1 GO:0004672;GO:0004713;GO:0005524;GO:0006468 K05086
gene-evm.TU.Chr18.853 rna-evm.model.Chr18.853 Chr18 32850207 32854935 PREDICTED: BDNF/NT-3 growth factors receptor GO:0004672;GO:0004713;GO:0005524;GO:0006468 K04360
gene-evm.TU.Chr18.855 rna-evm.model.Chr18.855 Chr18 33037320 33038359 PREDICTED: thyrotropin-releasing hormone receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr18.856 rna-evm.model.Chr18.856 Chr18 33041389 33045507 PREDICTED: Oxidoreductase OpS5 GO:0005507;GO:0016491;GO:0055114 K00423

For more detailed data, you can explore the Download section to access the full dataset.