CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2826 rna-evm.model.Chr1.2826 Chr1 88464631 88465671 PREDICTED: Neuropeptide receptor 22 GO:0004930;GO:0007186;GO:0016020 K04233
gene-evm.TU.Chr1.2828 rna-evm.model.Chr1.2828 Chr1 88491059 88491952 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K21842
gene-evm.TU.Chr1.2829 rna-evm.model.Chr1.2829 Chr1 88492105 88493036 PREDICTED: Y-linked testis-specific protein 1 GO:0007276 nan
gene-evm.TU.Chr1.2830 rna-evm.model.Chr1.2830 Chr1 88533047 88534728 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr1.2831 rna-evm.model.Chr1.2831 Chr1 88630567 88631044 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr1.2835 rna-evm.model.Chr1.2835 Chr1 88819369 88820072 uncharacterized protein nan nan
gene-evm.TU.Chr1.2836 rna-evm.model.Chr1.2836 Chr1 88837115 88897177 uncharacterized protein nan nan
gene-evm.TU.Chr1.2837 rna-evm.model.Chr1.2837 Chr1 88902425 88902931 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr1.2838 rna-evm.model.Chr1.2838 Chr1 88902932 88906540 uncharacterized protein nan nan
gene-evm.TU.Chr1.2839 rna-evm.model.Chr1.2839 Chr1 88906602 88938979 PREDICTED: KRAB domain-containing zinc finger protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.